J5_7V2M_002

3D structure

PDB id

7V2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K1k4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

7V2M|1|A|A|61, 7V2M|1|A|A|103, 7V2M|1|A|C|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7V2M_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0954

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7V2M|1|A|C|59
7V2M|1|A|A|60
7V2M|1|A|A|61
7V2M|1|A|G|62
*
7V2M|1|A|C|100
7V2M|1|A|G|101
7V2M|1|A|G|102
7V2M|1|A|A|103
7V2M|1|A|C|104
7V2M|1|A|G|105
7V2M|1|A|G|106
7V2M|1|A|G|107
*
7V2M|1|A|C|310
7V2M|1|A|A|311
7V2M|1|A|G|312
*
7V2M|1|A|C|333
7V2M|1|A|A|334
7V2M|1|A|C|335
*
7V2M|1|A|G|346
7V2M|1|A|G|347
7V2M|1|A|C|348
7V2M|1|A|A|349
7V2M|1|A|G|350

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20