J5_7V2O_002

3D structure

PDB id

7V2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

7V2O|1|A|A|103, 7V2O|1|A|C|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7V2O_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1167

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7V2O|1|A|C|59
7V2O|1|A|A|60
7V2O|1|A|A|61
7V2O|1|A|G|62
*
7V2O|1|A|C|100
7V2O|1|A|G|101
7V2O|1|A|G|102
7V2O|1|A|A|103
7V2O|1|A|C|104
7V2O|1|A|G|105
7V2O|1|A|G|106
7V2O|1|A|G|107
*
7V2O|1|A|C|310
7V2O|1|A|A|311
7V2O|1|A|G|312
*
7V2O|1|A|C|333
7V2O|1|A|A|334
7V2O|1|A|C|335
*
7V2O|1|A|G|346
7V2O|1|A|G|347
7V2O|1|A|C|348
7V2O|1|A|A|349
7V2O|1|A|G|350

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20