J5_7WTR_003

3D structure

PDB id

7WTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU

Length

37 nucleotides

Bulged bases

7WTR|1|C2|U|638, 7WTR|1|C2|U|639, 7WTR|1|C2|U|694, 7WTR|1|C2|C|696, 7WTR|1|C2|U|813, 7WTR|1|C2|G|815, 7WTR|1|C2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTR|1|C2|A|636
7WTR|1|C2|C|637
7WTR|1|C2|U|638
7WTR|1|C2|U|639
7WTR|1|C2|U|640
7WTR|1|C2|G|641
*
7WTR|1|C2|U|693
7WTR|1|C2|U|694
7WTR|1|C2|U|695
7WTR|1|C2|C|696
7WTR|1|C2|C|697
7WTR|1|C2|U|698
7WTR|1|C2|U|699
*
7WTR|1|C2|G|739
7WTR|1|C2|A|740
7WTR|1|C2|C|741
7WTR|1|C2|U|742
7WTR|1|C2|U|743
7WTR|1|C2|U|744
*
7WTR|1|C2|A|807
7WTR|1|C2|U|808
7WTR|1|C2|A|809
7WTR|1|C2|G|810
7WTR|1|C2|A|811
7WTR|1|C2|A|812
7WTR|1|C2|U|813
7WTR|1|C2|A|814
7WTR|1|C2|G|815
7WTR|1|C2|G|816
7WTR|1|C2|A|817
*
7WTR|1|C2|U|854
7WTR|1|C2|A|855
7WTR|1|C2|A|856
7WTR|1|C2|U|857
7WTR|1|C2|G|858
7WTR|1|C2|A|859
7WTR|1|C2|U|860

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SH

40S ribosomal protein S7-A

Chain SL

40S ribosomal protein S11-A

Chain SN

40S ribosomal protein S13

Chain SW

40S ribosomal protein S22-A