J5_7WTT_003
3D structure
- PDB id
- 7WTT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7WTT|1|2|A|92, 7WTT|1|2|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7WTT_003 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.065
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7WTT|1|2|C|53
7WTT|1|2|A|54
7WTT|1|2|U|55
7WTT|1|2|G|56
*
7WTT|1|2|C|89
7WTT|1|2|G|90
7WTT|1|2|A|91
7WTT|1|2|A|92
7WTT|1|2|U|93
7WTT|1|2|G|94
7WTT|1|2|G|95
7WTT|1|2|C|96
*
7WTT|1|2|G|434
7WTT|1|2|A|435
7WTT|1|2|G|436
*
7WTT|1|2|C|457
7WTT|1|2|A|458
7WTT|1|2|C|459
*
7WTT|1|2|G|470
7WTT|1|2|G|471
7WTT|1|2|C|472
7WTT|1|2|A|473
7WTT|1|2|G|474
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain E
- 40S ribosomal protein S4, X isoform
- Chain G
- 40S ribosomal protein S6
- Chain I
- 40S ribosomal protein S8
- Chain J
- 40S ribosomal protein S9
- Chain Y
- 40S ribosomal protein S24
- Chain u
- Pre-rRNA-processing protein TSR1 homolog
Coloring options: