J5_7WTU_002

3D structure

PDB id

7WTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTU|1|2|C|30
7WTU|1|2|U|31
7WTU|1|2|U|32
7WTU|1|2|G|33
7WTU|1|2|U|34
*
7WTU|1|2|A|521
7WTU|1|2|A|522
7WTU|1|2|A|523
7WTU|1|2|U|524
7WTU|1|2|A|525
7WTU|1|2|A|526
7WTU|1|2|C|527
*
7WTU|1|2|G|558
7WTU|1|2|G|559
7WTU|1|2|A|560
7WTU|1|2|A|561
7WTU|1|2|U|562
7WTU|1|2|G|563
7WTU|1|2|A|564
7WTU|1|2|G|565
*
7WTU|1|2|C|585
7WTU|1|2|G|586
7WTU|1|2|A|587
7WTU|1|2|G|588
7WTU|1|2|G|589
7WTU|1|2|A|590
7WTU|1|2|U|591
7WTU|1|2|C|592
7WTU|1|2|C|593
7WTU|1|2|A|594
7WTU|1|2|U|595
*
7WTU|1|2|A|641
7WTU|1|2|U|642
7WTU|1|2|A|643
7WTU|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30

Chain u

Pre-rRNA-processing protein TSR1 homolog