J5_7WTU_004

3D structure

PDB id

7WTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCGCUCG*CGGG*UG*CCG*CGACC

Length

22 nucleotides

Bulged bases

7WTU|1|2|G|126, 7WTU|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTU|1|2|G|123
7WTU|1|2|U|124
7WTU|1|2|C|125
7WTU|1|2|G|126
7WTU|1|2|C|127
7WTU|1|2|U|128
7WTU|1|2|C|129
7WTU|1|2|G|130
*
7WTU|1|2|C|182
7WTU|1|2|G|183
7WTU|1|2|G|184
7WTU|1|2|G|185
*
7WTU|1|2|U|214
7WTU|1|2|G|215
*
7WTU|1|2|C|310
7WTU|1|2|C|311
7WTU|1|2|G|312
*
7WTU|1|2|C|337
7WTU|1|2|G|338
7WTU|1|2|A|339
7WTU|1|2|C|340
7WTU|1|2|C|341

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8