J5_7WTV_002

3D structure

PDB id

7WTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTV|1|2|C|30
7WTV|1|2|U|31
7WTV|1|2|U|32
7WTV|1|2|G|33
7WTV|1|2|U|34
*
7WTV|1|2|A|521
7WTV|1|2|A|522
7WTV|1|2|A|523
7WTV|1|2|U|524
7WTV|1|2|A|525
7WTV|1|2|A|526
7WTV|1|2|C|527
*
7WTV|1|2|G|558
7WTV|1|2|G|559
7WTV|1|2|A|560
7WTV|1|2|A|561
7WTV|1|2|U|562
7WTV|1|2|G|563
7WTV|1|2|A|564
7WTV|1|2|G|565
*
7WTV|1|2|C|585
7WTV|1|2|G|586
7WTV|1|2|A|587
7WTV|1|2|G|588
7WTV|1|2|G|589
7WTV|1|2|A|590
7WTV|1|2|U|591
7WTV|1|2|C|592
7WTV|1|2|C|593
7WTV|1|2|A|594
7WTV|1|2|U|595
*
7WTV|1|2|A|641
7WTV|1|2|U|642
7WTV|1|2|A|643
7WTV|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30

Chain u

Pre-rRNA-processing protein TSR1 homolog