J5_7WTV_004

3D structure

PDB id

7WTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUCGCUCG*CGGG*UG*CCG*CGACC

Length

22 nucleotides

Bulged bases

7WTV|1|2|G|126, 7WTV|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTV|1|2|G|123
7WTV|1|2|U|124
7WTV|1|2|C|125
7WTV|1|2|G|126
7WTV|1|2|C|127
7WTV|1|2|U|128
7WTV|1|2|C|129
7WTV|1|2|G|130
*
7WTV|1|2|C|182
7WTV|1|2|G|183
7WTV|1|2|G|184
7WTV|1|2|G|185
*
7WTV|1|2|U|214
7WTV|1|2|G|215
*
7WTV|1|2|C|310
7WTV|1|2|C|311
7WTV|1|2|G|312
*
7WTV|1|2|C|337
7WTV|1|2|G|338
7WTV|1|2|A|339
7WTV|1|2|C|340
7WTV|1|2|C|341

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8