J5_7XAM_001

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

7XAM|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7XAM_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.086

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.2

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7XAM|1|A|C|44
7XAM|1|A|G|45
7XAM|1|A|A|46
7XAM|1|A|U|47
7XAM|1|A|G|48
7XAM|1|A|A|49
7XAM|1|A|A|50
7XAM|1|A|G|51
*
7XAM|1|A|C|113
7XAM|1|A|G|114
7XAM|1|A|A|115
7XAM|1|A|A|116
7XAM|1|A|U|117
7XAM|1|A|G|118
*
7XAM|1|A|C|127
7XAM|1|A|G|128
*
7XAM|1|A|C|147
7XAM|1|A|A|148
7XAM|1|A|C|149
*
7XAM|1|A|G|175
7XAM|1|A|G|176
7XAM|1|A|G|177

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23

Chain d

50S ribosomal protein L34