J5_7XAM_006

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCAAAAUGC*GA*UG*CAAACCAGU*AAC

Length

25 nucleotides

Bulged bases

7XAM|1|A|A|1975, 7XAM|1|A|G|1980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7XAM_006 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0874

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7XAM|1|A|G|1892
7XAM|1|A|C|1893
7XAM|1|A|A|1894
7XAM|1|A|A|1895
7XAM|1|A|A|1896
7XAM|1|A|A|1897
7XAM|1|A|U|1898
7XAM|1|A|G|1899
7XAM|1|A|C|1900
*
7XAM|1|A|G|1924
7XAM|1|A|A|1925
*
7XAM|1|A|U|1968
7XAM|1|A|G|1969
*
7XAM|1|A|C|1973
7XAM|1|A|A|1974
7XAM|1|A|A|1975
7XAM|1|A|A|1976
7XAM|1|A|C|1977
7XAM|1|A|C|1978
7XAM|1|A|A|1979
7XAM|1|A|G|1980
7XAM|1|A|U|1981
*
7XAM|1|A|A|2212
7XAM|1|A|A|2213
7XAM|1|A|C|2214

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14

Chain Q

50S ribosomal protein L19