J5_7XNY_002
3D structure
- PDB id
- 7XNY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GGAGU(OMC)*G(2MG)AC*GUUC*GCC*GCAGAU(OMC)
- Length
- 24 nucleotides
- Bulged bases
- 7XNY|1|L1|C|2289, 7XNY|1|L1|U|2350
- QA status
- Modified nucleotides: OMC, 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7XNY_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0637
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7XNY|1|L1|G|1335
7XNY|1|L1|G|1336
7XNY|1|L1|A|1337
7XNY|1|L1|G|1338
7XNY|1|L1|U|1339
7XNY|1|L1|OMC|1340
*
7XNY|1|L1|G|1516
7XNY|1|L1|2MG|1517
7XNY|1|L1|A|1518
7XNY|1|L1|C|1519
*
7XNY|1|L1|G|1658
7XNY|1|L1|U|1659
7XNY|1|L1|U|1660
7XNY|1|L1|C|1661
*
7XNY|1|L1|G|2288
7XNY|1|L1|C|2289
7XNY|1|L1|C|2290
*
7XNY|1|L1|G|2345
7XNY|1|L1|C|2346
7XNY|1|L1|A|2347
7XNY|1|L1|G|2348
7XNY|1|L1|A|2349
7XNY|1|L1|U|2350
7XNY|1|L1|OMC|2351
Current chains
- Chain L1
- 28S rRNA
Nearby chains
- Chain L3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- 60S ribosomal protein L15
- Chain La
- 60S ribosomal protein L27a
- Chain Le
- 60S ribosomal protein L32
- Chain Lr
- 60S ribosomal protein L28
Coloring options: