J5_7XNY_003
3D structure
- PDB id
- 7XNY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7XNY|1|L1|G|3620, 7XNY|1|L1|G|3625
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7XNY_003 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1038
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7XNY|1|L1|G|2855
7XNY|1|L1|C|2856
7XNY|1|L1|A|2857
7XNY|1|L1|A|2858
7XNY|1|L1|G|2859
7XNY|1|L1|C|2860
7XNY|1|L1|OMC|2861
7XNY|1|L1|G|2862
7XNY|1|L1|G|2863
*
7XNY|1|L1|U|2887
7XNY|1|L1|G|2888
*
7XNY|1|L1|U|3613
7XNY|1|L1|G|3614
*
7XNY|1|L1|C|3618
7XNY|1|L1|G|3619
7XNY|1|L1|G|3620
7XNY|1|L1|A|3621
7XNY|1|L1|C|3622
7XNY|1|L1|C|3623
7XNY|1|L1|A|3624
7XNY|1|L1|G|3625
7XNY|1|L1|G|3626
*
7XNY|1|L1|C|3835
7XNY|1|L1|A|3836
7XNY|1|L1|C|3837
Current chains
- Chain L1
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LR
- 60S ribosomal protein L19
- Chain LV
- 60S ribosomal protein L23
- Chain LW
- 60S ribosomal protein L24
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: