J5_7Y41_006

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCAAAAUGC*GA*UG*CAAACCAGU*AAC

Length

25 nucleotides

Bulged bases

7Y41|1|A|A|1975, 7Y41|1|A|G|1980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7Y41_006 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.1015

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7Y41|1|A|G|1892
7Y41|1|A|C|1893
7Y41|1|A|A|1894
7Y41|1|A|A|1895
7Y41|1|A|A|1896
7Y41|1|A|A|1897
7Y41|1|A|U|1898
7Y41|1|A|G|1899
7Y41|1|A|C|1900
*
7Y41|1|A|G|1924
7Y41|1|A|A|1925
*
7Y41|1|A|U|1968
7Y41|1|A|G|1969
*
7Y41|1|A|C|1973
7Y41|1|A|A|1974
7Y41|1|A|A|1975
7Y41|1|A|A|1976
7Y41|1|A|C|1977
7Y41|1|A|C|1978
7Y41|1|A|A|1979
7Y41|1|A|G|1980
7Y41|1|A|U|1981
*
7Y41|1|A|A|2212
7Y41|1|A|A|2213
7Y41|1|A|C|2214

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14

Chain Q

50S ribosomal protein L19