3D structure

PDB id
7Y7E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
CAG*CGUAC*GGG*CA*UG
Length
15 nucleotides
Bulged bases
7Y7E|1|a|A|532, 7Y7E|1|a|U|562
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7Y7E_005 not in the Motif Atlas
Homologous match to J5_5J7L_014
Geometric discrepancy: 0.0535
The information below is about J5_5J7L_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_43153.5
Basepair signature
cWW-cWW-cWW-F-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

7Y7E|1|a|C|531
7Y7E|1|a|A|532
7Y7E|1|a|G|533
*
7Y7E|1|a|C|560
7Y7E|1|a|G|561
7Y7E|1|a|U|562
7Y7E|1|a|A|563
7Y7E|1|a|C|564
*
7Y7E|1|a|G|577
7Y7E|1|a|G|578
7Y7E|1|a|G|579
*
7Y7E|1|a|C|1261
7Y7E|1|a|A|1262
*
7Y7E|1|a|U|2017
7Y7E|1|a|G|2018

Current chains

Chain a
23S rRNA

Nearby chains

Chain e
50S ribosomal protein L4
Chain p
50S ribosomal protein L20
Chain q
50S ribosomal protein L21
Chain r
50S ribosomal protein L22
Chain z
50S ribosomal protein L32

Coloring options:


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