3D structure

PDB id
7Y7E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
7Y7E|1|a|U|1758, 7Y7E|1|a|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7Y7E_007 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.0486
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

7Y7E|1|a|G|1674
7Y7E|1|a|C|1675
7Y7E|1|a|A|1676
7Y7E|1|a|A|1677
7Y7E|1|a|A|1678
7Y7E|1|a|A|1679
7Y7E|1|a|U|1680
7Y7E|1|a|G|1681
7Y7E|1|a|G|1682
*
7Y7E|1|a|C|1706
7Y7E|1|a|G|1707
*
7Y7E|1|a|U|1751
7Y7E|1|a|C|1752
*
7Y7E|1|a|G|1756
7Y7E|1|a|A|1757
7Y7E|1|a|U|1758
7Y7E|1|a|A|1759
7Y7E|1|a|C|1760
7Y7E|1|a|C|1761
7Y7E|1|a|A|1762
7Y7E|1|a|G|1763
7Y7E|1|a|C|1764
*
7Y7E|1|a|G|1988
7Y7E|1|a|G|1989
7Y7E|1|a|C|1990

Current chains

Chain a
23S rRNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain d
50S ribosomal protein L3
Chain j
50S ribosomal protein L14
Chain o
50S ribosomal protein L19

Coloring options:


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