J5_7YLA_004

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

7YLA|1|I|U|1758, 7YLA|1|I|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7YLA_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0653

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7YLA|1|I|G|1674
7YLA|1|I|C|1675
7YLA|1|I|A|1676
7YLA|1|I|A|1677
7YLA|1|I|A|1678
7YLA|1|I|A|1679
7YLA|1|I|U|1680
7YLA|1|I|G|1681
7YLA|1|I|G|1682
*
7YLA|1|I|C|1706
7YLA|1|I|G|1707
*
7YLA|1|I|U|1751
7YLA|1|I|C|1752
*
7YLA|1|I|G|1756
7YLA|1|I|A|1757
7YLA|1|I|U|1758
7YLA|1|I|A|1759
7YLA|1|I|C|1760
7YLA|1|I|C|1761
7YLA|1|I|A|1762
7YLA|1|I|G|1763
7YLA|1|I|C|1764
*
7YLA|1|I|G|1988
7YLA|1|I|G|1989
7YLA|1|I|C|1990

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain L

50S ribosomal protein L3

Chain S

50S ribosomal protein L14

Chain X

50S ribosomal protein L19