J5_7Z20_001

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7Z20|1|b|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7Z20_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0429

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7Z20|1|b|C|47
7Z20|1|b|G|48
7Z20|1|b|A|49
7Z20|1|b|U|50
7Z20|1|b|G|51
7Z20|1|b|A|52
7Z20|1|b|A|53
7Z20|1|b|G|54
*
7Z20|1|b|C|116
7Z20|1|b|G|117
7Z20|1|b|A|118
7Z20|1|b|A|119
7Z20|1|b|U|120
7Z20|1|b|G|121
*
7Z20|1|b|C|130
7Z20|1|b|A|131
*
7Z20|1|b|U|148
7Z20|1|b|A|149
7Z20|1|b|U|150
*
7Z20|1|b|A|176
7Z20|1|b|G|177
7Z20|1|b|G|178

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34