3D structure

PDB id
7Z34 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of pre-60S particle bound to DRG1(AFG2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CUUGA*UUUG*CA*UG*CAGAAAAG
Length
21 nucleotides
Bulged bases
7Z34|1|1|G|2418, 7Z34|1|1|A|2799, 7Z34|1|1|G|2800, 7Z34|1|1|A|2801, 7Z34|1|1|A|2802
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7Z34|1|1|C|2415
7Z34|1|1|U|2416
7Z34|1|1|U|2417
7Z34|1|1|G|2418
7Z34|1|1|A|2419
*
7Z34|1|1|U|2611
7Z34|1|1|U|2612
7Z34|1|1|U|2613
7Z34|1|1|G|2614
*
7Z34|1|1|C|2627
7Z34|1|1|A|2628
*
7Z34|1|1|U|2650
7Z34|1|1|G|2651
*
7Z34|1|1|C|2798
7Z34|1|1|A|2799
7Z34|1|1|G|2800
7Z34|1|1|A|2801
7Z34|1|1|A|2802
7Z34|1|1|A|2803
7Z34|1|1|A|2804
7Z34|1|1|G|2805

Current chains

Chain 1
35S pre-ribosomal RNA

Nearby chains

Chain A
60S ribosomal protein L2-A
Chain K
60S ribosomal protein L28
Chain N
60S ribosomal protein L15-A
Chain T
60S ribosomal protein L21-A
Chain o
60S ribosomal protein L29
Chain q
60S ribosomal protein L42-A
Chain v
60S ribosomal export protein NMD3

Coloring options:

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