J5_7Z3O_004
3D structure
- PDB id
- 7Z3O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAGGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7Z3O|1|1|G|2079, 7Z3O|1|1|G|2084
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7Z3O_004 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.1023
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
7Z3O|1|1|G|1886
7Z3O|1|1|C|1887
7Z3O|1|1|A|1888
7Z3O|1|1|A|1889
7Z3O|1|1|A|1890
7Z3O|1|1|A|1891
7Z3O|1|1|U|1892
7Z3O|1|1|A|1893
7Z3O|1|1|G|1894
*
7Z3O|1|1|U|1918
7Z3O|1|1|G|1919
*
7Z3O|1|1|U|2072
7Z3O|1|1|G|2073
*
7Z3O|1|1|C|2077
7Z3O|1|1|G|2078
7Z3O|1|1|G|2079
7Z3O|1|1|A|2080
7Z3O|1|1|C|2081
7Z3O|1|1|A|2082
7Z3O|1|1|G|2083
7Z3O|1|1|G|2084
7Z3O|1|1|G|2085
*
7Z3O|1|1|C|2294
7Z3O|1|1|A|2295
7Z3O|1|1|C|2296
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LR
- Ribosomal protein L19
- Chain LV
- 60S ribosomal protein l23-like protein
- Chain LW
- eL24
Coloring options: