J5_7ZJW_003
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUC*GCC*GCAGAU(OMC)
- Length
- 24 nucleotides
- Bulged bases
- 7ZJW|1|L5|C|2132, 7ZJW|1|L5|U|2193
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7ZJW_003 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0639
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63811.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7ZJW|1|L5|G|1279
7ZJW|1|L5|G|1280
7ZJW|1|L5|A|1281
7ZJW|1|L5|G|1282
7ZJW|1|L5|U|1283
7ZJW|1|L5|OMC|1284
*
7ZJW|1|L5|G|1471
7ZJW|1|L5|G|1472
7ZJW|1|L5|A|1473
7ZJW|1|L5|C|1474
*
7ZJW|1|L5|G|1613
7ZJW|1|L5|U|1614
7ZJW|1|L5|U|1615
7ZJW|1|L5|C|1616
*
7ZJW|1|L5|G|2131
7ZJW|1|L5|C|2132
7ZJW|1|L5|C|2133
*
7ZJW|1|L5|G|2188
7ZJW|1|L5|C|2189
7ZJW|1|L5|A|2190
7ZJW|1|L5|G|2191
7ZJW|1|L5|A|2192
7ZJW|1|L5|U|2193
7ZJW|1|L5|OMC|2194
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- 60S ribosomal protein L4
- Chain LO
- 60S ribosomal protein eL13
- Chain LQ
- 60S ribosomal protein L15
- Chain Ld
- 60S ribosomal protein L27a
- Chain Lh
- 60S ribosomal protein eL32
- Chain Ls
- 60S ribosomal protein eL28
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