J5_7ZJW_004
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7ZJW|1|L5|G|3352, 7ZJW|1|L5|G|3357
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7ZJW_004 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.0991
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7ZJW|1|L5|G|2698
7ZJW|1|L5|C|2699
7ZJW|1|L5|A|2700
7ZJW|1|L5|A|2701
7ZJW|1|L5|G|2702
7ZJW|1|L5|C|2703
7ZJW|1|L5|OMC|2704
7ZJW|1|L5|G|2705
7ZJW|1|L5|G|2706
*
7ZJW|1|L5|U|2730
7ZJW|1|L5|G|2731
*
7ZJW|1|L5|U|3345
7ZJW|1|L5|G|3346
*
7ZJW|1|L5|C|3350
7ZJW|1|L5|G|3351
7ZJW|1|L5|G|3352
7ZJW|1|L5|A|3353
7ZJW|1|L5|C|3354
7ZJW|1|L5|C|3355
7ZJW|1|L5|A|3356
7ZJW|1|L5|G|3357
7ZJW|1|L5|G|3358
*
7ZJW|1|L5|C|3567
7ZJW|1|L5|A|3568
7ZJW|1|L5|C|3569
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LE
- 60S ribosomal protein L3
- Chain LU
- 60S ribosomal protein L19
- Chain LY
- 60S ribosomal protein L23
- Chain LZ
- 60S ribosomal protein eL24
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: