3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU
Length
40 nucleotides
Bulged bases
7ZJW|1|L5|A|3640, 7ZJW|1|L5|A|4140, 7ZJW|1|L5|G|4197, 7ZJW|1|L5|U|4301, 7ZJW|1|L5|U|4302
QA status
Modified nucleotides: OMG, 5MC, UR3, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7ZJW|1|L5|A|3635
7ZJW|1|L5|G|3636
7ZJW|1|L5|A|3637
7ZJW|1|L5|A|3638
7ZJW|1|L5|G|3639
7ZJW|1|L5|A|3640
7ZJW|1|L5|C|3641
7ZJW|1|L5|C|3642
*
7ZJW|1|L5|OMG|4138
7ZJW|1|L5|G|4139
7ZJW|1|L5|A|4140
7ZJW|1|L5|U|4141
7ZJW|1|L5|A|4142
7ZJW|1|L5|A|4143
7ZJW|1|L5|C|4144
7ZJW|1|L5|U|4145
7ZJW|1|L5|G|4146
*
7ZJW|1|L5|C|4190
7ZJW|1|L5|U|4191
7ZJW|1|L5|U|4192
7ZJW|1|L5|5MC|4193
7ZJW|1|L5|G|4194
7ZJW|1|L5|A|4195
7ZJW|1|L5|U|4196
7ZJW|1|L5|G|4197
7ZJW|1|L5|U|4198
7ZJW|1|L5|C|4199
*
7ZJW|1|L5|G|4274
7ZJW|1|L5|G|4275
7ZJW|1|L5|UR3|4276
7ZJW|1|L5|U|4277
7ZJW|1|L5|PSU|4278
7ZJW|1|L5|A|4279
7ZJW|1|L5|G|4280
*
7ZJW|1|L5|PSU|4298
7ZJW|1|L5|A|4299
7ZJW|1|L5|G|4300
7ZJW|1|L5|U|4301
7ZJW|1|L5|U|4302
7ZJW|1|L5|U|4303

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LD
60S ribosomal protein uL2
Chain LE
60S ribosomal protein L3
Chain LF
60S ribosomal protein L4
Chain LL
60S ribosomal protein L10
Chain Ld
60S ribosomal protein L27a
Chain Le
60S ribosomal protein L29

Coloring options:

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