J5_7ZJW_005
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU
- Length
- 40 nucleotides
- Bulged bases
- 7ZJW|1|L5|A|3640, 7ZJW|1|L5|A|4140, 7ZJW|1|L5|G|4197, 7ZJW|1|L5|U|4301, 7ZJW|1|L5|U|4302
- QA status
- Modified nucleotides: OMG, 5MC, UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7ZJW|1|L5|A|3635
7ZJW|1|L5|G|3636
7ZJW|1|L5|A|3637
7ZJW|1|L5|A|3638
7ZJW|1|L5|G|3639
7ZJW|1|L5|A|3640
7ZJW|1|L5|C|3641
7ZJW|1|L5|C|3642
*
7ZJW|1|L5|OMG|4138
7ZJW|1|L5|G|4139
7ZJW|1|L5|A|4140
7ZJW|1|L5|U|4141
7ZJW|1|L5|A|4142
7ZJW|1|L5|A|4143
7ZJW|1|L5|C|4144
7ZJW|1|L5|U|4145
7ZJW|1|L5|G|4146
*
7ZJW|1|L5|C|4190
7ZJW|1|L5|U|4191
7ZJW|1|L5|U|4192
7ZJW|1|L5|5MC|4193
7ZJW|1|L5|G|4194
7ZJW|1|L5|A|4195
7ZJW|1|L5|U|4196
7ZJW|1|L5|G|4197
7ZJW|1|L5|U|4198
7ZJW|1|L5|C|4199
*
7ZJW|1|L5|G|4274
7ZJW|1|L5|G|4275
7ZJW|1|L5|UR3|4276
7ZJW|1|L5|U|4277
7ZJW|1|L5|PSU|4278
7ZJW|1|L5|A|4279
7ZJW|1|L5|G|4280
*
7ZJW|1|L5|PSU|4298
7ZJW|1|L5|A|4299
7ZJW|1|L5|G|4300
7ZJW|1|L5|U|4301
7ZJW|1|L5|U|4302
7ZJW|1|L5|U|4303
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein uL2
- Chain LE
- 60S ribosomal protein L3
- Chain LF
- 60S ribosomal protein L4
- Chain LL
- 60S ribosomal protein L10
- Chain Ld
- 60S ribosomal protein L27a
- Chain Le
- 60S ribosomal protein L29
Coloring options: