J5_7ZJX_005
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 7ZJX|1|L5|G|3654, 7ZJX|1|L5|A|4122, 7ZJX|1|L5|G|4123, 7ZJX|1|L5|A|4124, 7ZJX|1|L5|A|4125, 7ZJX|1|L5|A|4126
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7ZJX_005 not in the Motif Atlas
- Homologous match to J5_8C3A_006
- Geometric discrepancy: 0.3474
- The information below is about J5_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7ZJX|1|L5|PSU|3652
7ZJX|1|L5|U|3653
7ZJX|1|L5|G|3654
7ZJX|1|L5|A|3655
*
7ZJX|1|L5|U|3934
7ZJX|1|L5|U|3935
7ZJX|1|L5|U|3936
7ZJX|1|L5|G|3937
*
7ZJX|1|L5|C|3950
7ZJX|1|L5|A|3951
*
7ZJX|1|L5|OMU|3973
7ZJX|1|L5|OMG|3974
*
7ZJX|1|L5|C|4121
7ZJX|1|L5|A|4122
7ZJX|1|L5|G|4123
7ZJX|1|L5|A|4124
7ZJX|1|L5|A|4125
7ZJX|1|L5|A|4126
7ZJX|1|L5|A|4127
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein uL2
- Chain LQ
- Ribosomal protein L15
- Chain LT
- 60S ribosomal Protein eL18
- Chain LW
- 60S ribosomal protein L21
- Chain Ld
- 60S ribosomal protein L27a
- Chain Le
- 60S ribosomal protein L29
- Chain Lq
- 60S ribosomal protein eL42
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