J5_7ZJX_008
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUG*CGAA(PSU)GGC*GA(OMG)*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7ZJX|1|S2|U|55, 7ZJX|1|S2|A|92, 7ZJX|1|S2|C|473
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7ZJX_008 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1072
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7ZJX|1|S2|C|53
7ZJX|1|S2|A|54
7ZJX|1|S2|U|55
7ZJX|1|S2|G|56
*
7ZJX|1|S2|C|89
7ZJX|1|S2|G|90
7ZJX|1|S2|A|91
7ZJX|1|S2|A|92
7ZJX|1|S2|PSU|93
7ZJX|1|S2|G|94
7ZJX|1|S2|G|95
7ZJX|1|S2|C|96
*
7ZJX|1|S2|G|435
7ZJX|1|S2|A|436
7ZJX|1|S2|OMG|437
*
7ZJX|1|S2|C|458
7ZJX|1|S2|A|459
7ZJX|1|S2|C|460
*
7ZJX|1|S2|G|471
7ZJX|1|S2|G|472
7ZJX|1|S2|C|473
7ZJX|1|S2|A|474
7ZJX|1|S2|G|475
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LY
- 60S ribosomal protein L23
- Chain SP
- 40S ribosomal protein S4
- Chain SR
- 40S ribosomal protein S6
- Chain ST
- 40S ribosomal protein S8
- Chain SU
- 40S ribosomal protein S9
- Chain Sj
- 40S ribosomal protein S24
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