J5_7ZP8_001

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7ZP8|1|b|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7ZP8_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0808

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7ZP8|1|b|C|47
7ZP8|1|b|G|48
7ZP8|1|b|A|49
7ZP8|1|b|U|50
7ZP8|1|b|G|51
7ZP8|1|b|A|52
7ZP8|1|b|A|53
7ZP8|1|b|G|54
*
7ZP8|1|b|C|116
7ZP8|1|b|G|117
7ZP8|1|b|A|118
7ZP8|1|b|A|119
7ZP8|1|b|U|120
7ZP8|1|b|G|121
*
7ZP8|1|b|C|130
7ZP8|1|b|A|131
*
7ZP8|1|b|U|148
7ZP8|1|b|A|149
7ZP8|1|b|U|150
*
7ZP8|1|b|A|176
7ZP8|1|b|G|177
7ZP8|1|b|G|178

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34