J5_7ZPQ_004

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

7ZPQ|1|2|U|128, 7ZPQ|1|2|U|132, 7ZPQ|1|2|U|134, 7ZPQ|1|2|A|135, 7ZPQ|1|2|A|140, 7ZPQ|1|2|U|141, 7ZPQ|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZPQ|1|2|A|124
7ZPQ|1|2|U|125
7ZPQ|1|2|A|126
7ZPQ|1|2|G|127
7ZPQ|1|2|U|128
7ZPQ|1|2|U|129
7ZPQ|1|2|C|130
7ZPQ|1|2|C|131
7ZPQ|1|2|U|132
7ZPQ|1|2|U|133
7ZPQ|1|2|U|134
7ZPQ|1|2|A|135
7ZPQ|1|2|C|136
7ZPQ|1|2|U|137
7ZPQ|1|2|A|138
7ZPQ|1|2|C|139
7ZPQ|1|2|A|140
7ZPQ|1|2|U|141
7ZPQ|1|2|G|142
7ZPQ|1|2|G|143
*
7ZPQ|1|2|C|172
7ZPQ|1|2|A|173
7ZPQ|1|2|U|174
7ZPQ|1|2|G|175
7ZPQ|1|2|C|176
7ZPQ|1|2|U|177
7ZPQ|1|2|U|178
7ZPQ|1|2|A|179
7ZPQ|1|2|A|180
7ZPQ|1|2|A|181
7ZPQ|1|2|A|182
*
7ZPQ|1|2|U|203
7ZPQ|1|2|G|204
*
7ZPQ|1|2|C|263
7ZPQ|1|2|G|264
7ZPQ|1|2|A|265
7ZPQ|1|2|A|266
7ZPQ|1|2|U|267
*
7ZPQ|1|2|A|288
7ZPQ|1|2|U|289
7ZPQ|1|2|G|290
7ZPQ|1|2|G|291
7ZPQ|1|2|U|292
7ZPQ|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AG

40S ribosomal protein S6-A

Chain AI

40S ribosomal protein S8