J5_7ZPQ_006
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CGAUGAAG*UGAACG*CG*CAU*AGG
- Length
- 22 nucleotides
- Bulged bases
- 7ZPQ|1|3|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7ZPQ_006 not in the Motif Atlas
- Homologous match to J5_9H3G_001
- Geometric discrepancy: 0.0797
- The information below is about J5_9H3G_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.4
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
7ZPQ|1|3|C|35
7ZPQ|1|3|G|36
7ZPQ|1|3|A|37
7ZPQ|1|3|U|38
7ZPQ|1|3|G|39
7ZPQ|1|3|A|40
7ZPQ|1|3|A|41
7ZPQ|1|3|G|42
*
7ZPQ|1|3|U|102
7ZPQ|1|3|G|103
7ZPQ|1|3|A|104
7ZPQ|1|3|A|105
7ZPQ|1|3|C|106
7ZPQ|1|3|G|107
*
7ZPQ|1|3|C|115
7ZPQ|1|3|G|116
*
7ZPQ|1|3|C|137
7ZPQ|1|3|A|138
7ZPQ|1|3|U|139
*
7ZPQ|1|5|A|20
7ZPQ|1|5|G|21
7ZPQ|1|5|G|22
Current chains
- Chain 3
- 5.8S ribosomal RNA
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain BM
- 60S ribosomal protein L15-A
- Chain BW
- 60S ribosomal protein L25
- Chain Bg
- 60S ribosomal protein L35-A
- Chain Bi
- 60S ribosomal protein L37-A
Coloring options: