J5_7ZPQ_007
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 7ZPQ|1|5|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7ZPQ_007 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0526
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7ZPQ|1|5|G|658
7ZPQ|1|5|G|659
7ZPQ|1|5|A|660
7ZPQ|1|5|G|661
7ZPQ|1|5|U|662
7ZPQ|1|5|C|663
*
7ZPQ|1|5|G|799
7ZPQ|1|5|G|800
7ZPQ|1|5|A|801
7ZPQ|1|5|C|802
*
7ZPQ|1|5|G|941
7ZPQ|1|5|U|942
7ZPQ|1|5|U|943
7ZPQ|1|5|C|944
*
7ZPQ|1|5|G|1375
7ZPQ|1|5|C|1376
*
7ZPQ|1|5|G|1431
7ZPQ|1|5|C|1432
7ZPQ|1|5|A|1433
7ZPQ|1|5|G|1434
7ZPQ|1|5|A|1435
7ZPQ|1|5|U|1436
7ZPQ|1|5|C|1437
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BC
- RPL4A isoform 1
- Chain BK
- 60S ribosomal protein L13-A
- Chain BM
- 60S ribosomal protein L15-A
- Chain BZ
- 60S ribosomal protein L28
- Chain Bd
- RPL32 isoform 1
Coloring options: