J5_7ZPQ_010
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 7ZPQ|1|5|A|2404, 7ZPQ|1|5|A|2817, 7ZPQ|1|5|U|2873, 7ZPQ|1|5|G|2874, 7ZPQ|1|5|U|2978, 7ZPQ|1|5|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7ZPQ|1|5|A|2399
7ZPQ|1|5|G|2400
7ZPQ|1|5|A|2401
7ZPQ|1|5|A|2402
7ZPQ|1|5|G|2403
7ZPQ|1|5|A|2404
7ZPQ|1|5|C|2405
7ZPQ|1|5|C|2406
*
7ZPQ|1|5|G|2815
7ZPQ|1|5|G|2816
7ZPQ|1|5|A|2817
7ZPQ|1|5|U|2818
7ZPQ|1|5|A|2819
7ZPQ|1|5|A|2820
7ZPQ|1|5|C|2821
7ZPQ|1|5|U|2822
7ZPQ|1|5|G|2823
*
7ZPQ|1|5|C|2867
7ZPQ|1|5|U|2868
7ZPQ|1|5|U|2869
7ZPQ|1|5|C|2870
7ZPQ|1|5|G|2871
7ZPQ|1|5|A|2872
7ZPQ|1|5|U|2873
7ZPQ|1|5|G|2874
7ZPQ|1|5|U|2875
7ZPQ|1|5|C|2876
*
7ZPQ|1|5|G|2951
7ZPQ|1|5|G|2952
7ZPQ|1|5|U|2953
7ZPQ|1|5|U|2954
7ZPQ|1|5|U|2955
7ZPQ|1|5|A|2956
7ZPQ|1|5|G|2957
*
7ZPQ|1|5|U|2975
7ZPQ|1|5|A|2976
7ZPQ|1|5|G|2977
7ZPQ|1|5|U|2978
7ZPQ|1|5|U|2979
7ZPQ|1|5|U|2980
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain BA
- 60S ribosomal protein L2-A
- Chain BB
- 60S ribosomal protein L3
- Chain BC
- RPL4A isoform 1
- Chain BI
- RPL10 isoform 1
- Chain BZ
- 60S ribosomal protein L28
- Chain Ba
- 60S ribosomal protein L29
Coloring options: