J5_7ZPQ_012

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

ACUUUG*UUUCCUUC*GGACUUU*AUAGAAUAGGA*UAAUGAU

Length

39 nucleotides

Bulged bases

7ZPQ|1|2|U|639, 7ZPQ|1|2|U|694, 7ZPQ|1|2|C|696, 7ZPQ|1|2|C|697, 7ZPQ|1|2|U|813, 7ZPQ|1|2|G|815, 7ZPQ|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZPQ|1|2|A|636
7ZPQ|1|2|C|637
7ZPQ|1|2|U|638
7ZPQ|1|2|U|639
7ZPQ|1|2|U|640
7ZPQ|1|2|G|641
*
7ZPQ|1|2|U|693
7ZPQ|1|2|U|694
7ZPQ|1|2|U|695
7ZPQ|1|2|C|696
7ZPQ|1|2|C|697
7ZPQ|1|2|U|698
7ZPQ|1|2|U|699
7ZPQ|1|2|C|700
*
7ZPQ|1|2|G|738
7ZPQ|1|2|G|739
7ZPQ|1|2|A|740
7ZPQ|1|2|C|741
7ZPQ|1|2|U|742
7ZPQ|1|2|U|743
7ZPQ|1|2|U|744
*
7ZPQ|1|2|A|807
7ZPQ|1|2|U|808
7ZPQ|1|2|A|809
7ZPQ|1|2|G|810
7ZPQ|1|2|A|811
7ZPQ|1|2|A|812
7ZPQ|1|2|U|813
7ZPQ|1|2|A|814
7ZPQ|1|2|G|815
7ZPQ|1|2|G|816
7ZPQ|1|2|A|817
*
7ZPQ|1|2|U|854
7ZPQ|1|2|A|855
7ZPQ|1|2|A|856
7ZPQ|1|2|U|857
7ZPQ|1|2|G|858
7ZPQ|1|2|A|859
7ZPQ|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AH

40S ribosomal protein S7-A

Chain AL

40S ribosomal protein S11-A

Chain AN

40S ribosomal protein S13

Chain AW

RPS22A isoform 1

Chain BQ

60S ribosomal protein L19-A