J5_7ZQ5_001

3D structure

PDB id

7ZQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7ZQ5|1|b|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7ZQ5_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0631

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7ZQ5|1|b|C|47
7ZQ5|1|b|G|48
7ZQ5|1|b|A|49
7ZQ5|1|b|U|50
7ZQ5|1|b|G|51
7ZQ5|1|b|A|52
7ZQ5|1|b|A|53
7ZQ5|1|b|G|54
*
7ZQ5|1|b|C|116
7ZQ5|1|b|G|117
7ZQ5|1|b|A|118
7ZQ5|1|b|A|119
7ZQ5|1|b|U|120
7ZQ5|1|b|G|121
*
7ZQ5|1|b|C|130
7ZQ5|1|b|A|131
*
7ZQ5|1|b|U|148
7ZQ5|1|b|A|149
7ZQ5|1|b|U|150
*
7ZQ5|1|b|A|176
7ZQ5|1|b|G|177
7ZQ5|1|b|G|178

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34