J5_7ZQ6_001

3D structure

PDB id

7ZQ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7ZQ6|1|b|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7ZQ6_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0488

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7ZQ6|1|b|C|47
7ZQ6|1|b|G|48
7ZQ6|1|b|A|49
7ZQ6|1|b|U|50
7ZQ6|1|b|G|51
7ZQ6|1|b|A|52
7ZQ6|1|b|A|53
7ZQ6|1|b|G|54
*
7ZQ6|1|b|C|116
7ZQ6|1|b|G|117
7ZQ6|1|b|A|118
7ZQ6|1|b|A|119
7ZQ6|1|b|U|120
7ZQ6|1|b|G|121
*
7ZQ6|1|b|C|130
7ZQ6|1|b|A|131
*
7ZQ6|1|b|U|148
7ZQ6|1|b|A|149
7ZQ6|1|b|U|150
*
7ZQ6|1|b|A|176
7ZQ6|1|b|G|177
7ZQ6|1|b|G|178

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34