J5_7ZQ6_005

3D structure

PDB id

7ZQ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC

Length

35 nucleotides

Bulged bases

7ZQ6|1|b|A|2448, 7ZQ6|1|b|U|2449, 7ZQ6|1|b|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZQ6|1|b|G|2057
7ZQ6|1|b|A|2058
7ZQ6|1|b|A|2059
7ZQ6|1|b|A|2060
7ZQ6|1|b|G|2061
7ZQ6|1|b|A|2062
7ZQ6|1|b|C|2063
7ZQ6|1|b|C|2064
*
7ZQ6|1|b|G|2446
7ZQ6|1|b|G|2447
7ZQ6|1|b|A|2448
7ZQ6|1|b|U|2449
7ZQ6|1|b|A|2450
7ZQ6|1|b|A|2451
7ZQ6|1|b|C|2452
7ZQ6|1|b|A|2453
*
7ZQ6|1|b|U|2500
7ZQ6|1|b|C|2501
7ZQ6|1|b|G|2502
7ZQ6|1|b|A|2503
7ZQ6|1|b|U|2504
7ZQ6|1|b|G|2505
7ZQ6|1|b|U|2506
*
7ZQ6|1|b|G|2583
7ZQ6|1|b|U|2584
7ZQ6|1|b|U|2585
7ZQ6|1|b|U|2586
7ZQ6|1|b|A|2587
7ZQ6|1|b|G|2588
*
7ZQ6|1|b|C|2606
7ZQ6|1|b|G|2607
7ZQ6|1|b|G|2608
7ZQ6|1|b|U|2609
7ZQ6|1|b|C|2610
7ZQ6|1|b|C|2611

Current chains

Chain b

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L32

Chain M

Transfer RNA; tRNA

Chain c

50S ribosomal protein L2

Chain d

50S ribosomal protein L3

Chain e

50S ribosomal protein L4

Chain l

50S ribosomal protein L15

Chain m

50S ribosomal protein L16

Chain s

50S ribosomal protein L22

Chain z

Nascent chain