J5_7ZRS_008
3D structure
- PDB id
- 7ZRS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 7ZRS|1|5|U|720, 7ZRS|1|5|A|785, 7ZRS|1|5|G|786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7ZRS_008 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0565
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7ZRS|1|5|C|676
7ZRS|1|5|G|677
7ZRS|1|5|A|678
7ZRS|1|5|G|679
*
7ZRS|1|5|C|703
7ZRS|1|5|G|704
7ZRS|1|5|U|705
7ZRS|1|5|A|706
7ZRS|1|5|A|707
*
7ZRS|1|5|U|714
7ZRS|1|5|G|715
7ZRS|1|5|A|716
7ZRS|1|5|A|717
7ZRS|1|5|C|718
7ZRS|1|5|G|719
7ZRS|1|5|U|720
7ZRS|1|5|A|721
7ZRS|1|5|G|722
*
7ZRS|1|5|C|750
7ZRS|1|5|G|751
7ZRS|1|5|A|752
*
7ZRS|1|5|U|783
7ZRS|1|5|A|784
7ZRS|1|5|A|785
7ZRS|1|5|G|786
7ZRS|1|5|A|787
7ZRS|1|5|G|788
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain BC
- RPL4A isoform 1
- Chain BK
- 60S ribosomal protein L13-A
- Chain BP
- 60S ribosomal protein L18-A
- Chain BZ
- 60S ribosomal protein L28
- Chain Ba
- 60S ribosomal protein L29
- Chain Bh
- 60S ribosomal protein L36-A
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