J5_7ZRS_009
3D structure
- PDB id
- 7ZRS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7ZRS|1|5|G|2117, 7ZRS|1|5|G|2122
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7ZRS_009 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.0613
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
7ZRS|1|5|G|1907
7ZRS|1|5|C|1908
7ZRS|1|5|A|1909
7ZRS|1|5|A|1910
7ZRS|1|5|A|1911
7ZRS|1|5|A|1912
7ZRS|1|5|U|1913
7ZRS|1|5|A|1914
7ZRS|1|5|G|1915
*
7ZRS|1|5|U|1939
7ZRS|1|5|G|1940
*
7ZRS|1|5|U|2110
7ZRS|1|5|G|2111
*
7ZRS|1|5|C|2115
7ZRS|1|5|G|2116
7ZRS|1|5|G|2117
7ZRS|1|5|A|2118
7ZRS|1|5|C|2119
7ZRS|1|5|A|2120
7ZRS|1|5|A|2121
7ZRS|1|5|G|2122
7ZRS|1|5|G|2123
*
7ZRS|1|5|C|2332
7ZRS|1|5|A|2333
7ZRS|1|5|C|2334
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain BB
- 60S ribosomal protein L3
- Chain BQ
- 60S ribosomal protein L19-A
- Chain BU
- 60S ribosomal protein L23-A
- Chain BV
- RPL24A isoform 1
Coloring options: