J5_7ZTA_001

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7ZTA_001 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.0822

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7ZTA|1|16S1|C|36
7ZTA|1|16S1|U|37
7ZTA|1|16S1|G|38
7ZTA|1|16S1|G|39
*
7ZTA|1|16S1|C|403
7ZTA|1|16S1|G|404
7ZTA|1|16S1|U|405
7ZTA|1|16S1|G|406
*
7ZTA|1|16S1|C|436
7ZTA|1|16S1|U|437
7ZTA|1|16S1|U|438
7ZTA|1|16S1|U|439
7ZTA|1|16S1|C|440
*
7ZTA|1|16S1|G|497
7ZTA|1|16S1|A|498
7ZTA|1|16S1|A|499
7ZTA|1|16S1|G|500
*
7ZTA|1|16S1|C|545
7ZTA|1|16S1|A|546
7ZTA|1|16S1|A|547
7ZTA|1|16S1|G|548

Current chains

Chain 16S1

16S ribosomal RNA

Nearby chains

Chain S041

30S ribosomal protein S4

Chain S121

30S ribosomal protein S12