J5_7ZTA_004

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7ZTA|1|23S1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7ZTA_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0574

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7ZTA|1|23S1|C|47
7ZTA|1|23S1|G|48
7ZTA|1|23S1|A|49
7ZTA|1|23S1|U|50
7ZTA|1|23S1|G|51
7ZTA|1|23S1|A|52
7ZTA|1|23S1|A|53
7ZTA|1|23S1|G|54
*
7ZTA|1|23S1|C|116
7ZTA|1|23S1|G|117
7ZTA|1|23S1|A|118
7ZTA|1|23S1|A|119
7ZTA|1|23S1|U|120
7ZTA|1|23S1|G|121
*
7ZTA|1|23S1|C|130
7ZTA|1|23S1|A|131
*
7ZTA|1|23S1|U|148
7ZTA|1|23S1|A|149
7ZTA|1|23S1|U|150
*
7ZTA|1|23S1|A|176
7ZTA|1|23S1|G|177
7ZTA|1|23S1|G|178

Current chains

Chain 23S1

23S ribosomal RNA

Nearby chains

Chain L341

50S ribosomal protein L34