J5_7ZUW_005

3D structure

PDB id

7ZUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

7ZUW|1|2|U|128, 7ZUW|1|2|U|132, 7ZUW|1|2|U|134, 7ZUW|1|2|A|140, 7ZUW|1|2|U|141, 7ZUW|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZUW|1|2|A|124
7ZUW|1|2|U|125
7ZUW|1|2|A|126
7ZUW|1|2|G|127
7ZUW|1|2|U|128
7ZUW|1|2|U|129
7ZUW|1|2|C|130
7ZUW|1|2|C|131
7ZUW|1|2|U|132
7ZUW|1|2|U|133
7ZUW|1|2|U|134
7ZUW|1|2|A|135
7ZUW|1|2|C|136
7ZUW|1|2|U|137
7ZUW|1|2|A|138
7ZUW|1|2|C|139
7ZUW|1|2|A|140
7ZUW|1|2|U|141
7ZUW|1|2|G|142
7ZUW|1|2|G|143
*
7ZUW|1|2|C|172
7ZUW|1|2|A|173
7ZUW|1|2|U|174
7ZUW|1|2|G|175
7ZUW|1|2|C|176
7ZUW|1|2|U|177
7ZUW|1|2|U|178
7ZUW|1|2|A|179
7ZUW|1|2|A|180
7ZUW|1|2|A|181
7ZUW|1|2|A|182
*
7ZUW|1|2|U|203
7ZUW|1|2|G|204
*
7ZUW|1|2|C|263
7ZUW|1|2|G|264
7ZUW|1|2|A|265
7ZUW|1|2|A|266
7ZUW|1|2|U|267
*
7ZUW|1|2|A|288
7ZUW|1|2|U|289
7ZUW|1|2|G|290
7ZUW|1|2|G|291
7ZUW|1|2|U|292
7ZUW|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AG

40S ribosomal protein S6-A

Chain AI

40S ribosomal protein S8-B