3D structure

PDB id
7ZUW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae
Experimental method
ELECTRON MICROSCOPY
Resolution
4.3 Å

Loop

Sequence
GCAAAAUAG*UG*UG*CGGACAAGG*CAC
Length
25 nucleotides
Bulged bases
7ZUW|1|5|G|2117, 7ZUW|1|5|G|2122
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7ZUW_010 not in the Motif Atlas
Homologous match to J5_8P9A_013
Geometric discrepancy: 0.0717
The information below is about J5_8P9A_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_99177.1
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
10

Unit IDs

7ZUW|1|5|G|1907
7ZUW|1|5|C|1908
7ZUW|1|5|A|1909
7ZUW|1|5|A|1910
7ZUW|1|5|A|1911
7ZUW|1|5|A|1912
7ZUW|1|5|U|1913
7ZUW|1|5|A|1914
7ZUW|1|5|G|1915
*
7ZUW|1|5|U|1939
7ZUW|1|5|G|1940
*
7ZUW|1|5|U|2110
7ZUW|1|5|G|2111
*
7ZUW|1|5|C|2115
7ZUW|1|5|G|2116
7ZUW|1|5|G|2117
7ZUW|1|5|A|2118
7ZUW|1|5|C|2119
7ZUW|1|5|A|2120
7ZUW|1|5|A|2121
7ZUW|1|5|G|2122
7ZUW|1|5|G|2123
*
7ZUW|1|5|C|2332
7ZUW|1|5|A|2333
7ZUW|1|5|C|2334

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain BB
60S ribosomal protein L3
Chain BQ
60S ribosomal protein L19-A
Chain BU
60S ribosomal protein L23-A
Chain BV
RPL24A isoform 1

Coloring options:


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