J5_7ZUW_013

3D structure

PDB id

7ZUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

ACUUUG*UUUCCUUC*GGACUUU*AUAGAAUAGGA*UAAUGAU

Length

39 nucleotides

Bulged bases

7ZUW|1|2|U|639, 7ZUW|1|2|U|694, 7ZUW|1|2|C|696, 7ZUW|1|2|C|697, 7ZUW|1|2|U|813, 7ZUW|1|2|G|815, 7ZUW|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZUW|1|2|A|636
7ZUW|1|2|C|637
7ZUW|1|2|U|638
7ZUW|1|2|U|639
7ZUW|1|2|U|640
7ZUW|1|2|G|641
*
7ZUW|1|2|U|693
7ZUW|1|2|U|694
7ZUW|1|2|U|695
7ZUW|1|2|C|696
7ZUW|1|2|C|697
7ZUW|1|2|U|698
7ZUW|1|2|U|699
7ZUW|1|2|C|700
*
7ZUW|1|2|G|738
7ZUW|1|2|G|739
7ZUW|1|2|A|740
7ZUW|1|2|C|741
7ZUW|1|2|U|742
7ZUW|1|2|U|743
7ZUW|1|2|U|744
*
7ZUW|1|2|A|807
7ZUW|1|2|U|808
7ZUW|1|2|A|809
7ZUW|1|2|G|810
7ZUW|1|2|A|811
7ZUW|1|2|A|812
7ZUW|1|2|U|813
7ZUW|1|2|A|814
7ZUW|1|2|G|815
7ZUW|1|2|G|816
7ZUW|1|2|A|817
*
7ZUW|1|2|U|854
7ZUW|1|2|A|855
7ZUW|1|2|A|856
7ZUW|1|2|U|857
7ZUW|1|2|G|858
7ZUW|1|2|A|859
7ZUW|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AH

40S ribosomal protein S7-A

Chain AL

40S ribosomal protein S11-A

Chain AN

40S ribosomal protein S13

Chain AW

RPS22A isoform 1

Chain BQ

60S ribosomal protein L19-A