J5_8A57_007
3D structure
- PDB id
- 8A57 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 8A57|1|A|U|2109, 8A57|1|A|G|2461, 8A57|1|A|G|2462, 8A57|1|A|A|2463, 8A57|1|A|U|2464
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8A57_007 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.0782
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8A57|1|A|U|2107
8A57|1|A|U|2108
8A57|1|A|U|2109
8A57|1|A|A|2110
*
8A57|1|A|U|2276
8A57|1|A|U|2277
8A57|1|A|U|2278
8A57|1|A|G|2279
*
8A57|1|A|C|2291
8A57|1|A|G|2292
*
8A57|1|A|C|2314
8A57|1|A|G|2315
*
8A57|1|A|C|2460
8A57|1|A|G|2461
8A57|1|A|G|2462
8A57|1|A|A|2463
8A57|1|A|U|2464
8A57|1|A|A|2465
8A57|1|A|A|2466
8A57|1|A|A|2467
8A57|1|A|A|2468
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L28
- Chain 8
- 50S ribosomal protein L35
- Chain G
- 50S ribosomal protein L2
- Chain O
- 50S ribosomal protein L15
- Chain Z
- 50S ribosomal protein L27
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