J5_8A5I_001

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGAAGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

8A5I|1|A|A|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8A5I_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0463

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8A5I|1|A|C|47
8A5I|1|A|G|48
8A5I|1|A|A|49
8A5I|1|A|A|50
8A5I|1|A|G|51
8A5I|1|A|A|52
8A5I|1|A|A|53
8A5I|1|A|G|54
*
8A5I|1|A|C|115
8A5I|1|A|G|116
8A5I|1|A|A|117
8A5I|1|A|A|118
8A5I|1|A|U|119
8A5I|1|A|G|120
*
8A5I|1|A|C|129
8A5I|1|A|A|130
*
8A5I|1|A|U|149
8A5I|1|A|A|150
8A5I|1|A|U|151
*
8A5I|1|A|A|177
8A5I|1|A|A|178
8A5I|1|A|G|179

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain W

50S ribosomal protein L23