J5_8A5I_002

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CCAAAC*GGGUUGUA*UGAGUAC*GGAAUCCG*CAAG

Length

33 nucleotides

Bulged bases

8A5I|1|A|U|300, 8A5I|1|A|C|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8A5I|1|A|C|270
8A5I|1|A|C|271
8A5I|1|A|A|272
8A5I|1|A|A|273
8A5I|1|A|A|274
8A5I|1|A|C|275
*
8A5I|1|A|G|294
8A5I|1|A|G|295
8A5I|1|A|G|296
8A5I|1|A|U|297
8A5I|1|A|U|298
8A5I|1|A|G|299
8A5I|1|A|U|300
8A5I|1|A|A|301
*
8A5I|1|A|U|415
8A5I|1|A|G|416
8A5I|1|A|A|417
8A5I|1|A|G|418
8A5I|1|A|U|419
8A5I|1|A|A|420
8A5I|1|A|C|421
*
8A5I|1|A|G|445
8A5I|1|A|G|446
8A5I|1|A|A|447
8A5I|1|A|A|448
8A5I|1|A|U|449
8A5I|1|A|C|450
8A5I|1|A|C|451
8A5I|1|A|G|452
*
8A5I|1|A|C|467
8A5I|1|A|A|468
8A5I|1|A|A|469
8A5I|1|A|G|470

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28