J5_8A5I_004
3D structure
- PDB id
- 8A5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGAGUU*AGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 8A5I|1|A|U|1300
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8A5I_004 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.0714
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8A5I|1|A|C|627
8A5I|1|A|G|628
8A5I|1|A|A|629
8A5I|1|A|G|630
8A5I|1|A|U|631
8A5I|1|A|U|632
*
8A5I|1|A|A|714
8A5I|1|A|G|715
8A5I|1|A|A|716
8A5I|1|A|C|717
*
8A5I|1|A|G|855
8A5I|1|A|U|856
8A5I|1|A|U|857
8A5I|1|A|C|858
*
8A5I|1|A|G|1241
8A5I|1|A|C|1242
*
8A5I|1|A|G|1295
8A5I|1|A|A|1296
8A5I|1|A|G|1297
8A5I|1|A|A|1298
8A5I|1|A|A|1299
8A5I|1|A|U|1300
8A5I|1|A|G|1301
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 8
- 50S ribosomal protein L35
- Chain I
- 50S ribosomal protein L4
- Chain O
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L21
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