J5_8AGW_002
3D structure
- PDB id
- 8AGW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state D
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8AGW|1|f|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8AGW_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.0457
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8AGW|1|f|G|658
8AGW|1|f|G|659
8AGW|1|f|A|660
8AGW|1|f|G|661
8AGW|1|f|U|662
8AGW|1|f|C|663
*
8AGW|1|f|G|799
8AGW|1|f|G|800
8AGW|1|f|A|801
8AGW|1|f|C|802
*
8AGW|1|f|G|941
8AGW|1|f|U|942
8AGW|1|f|U|943
8AGW|1|f|C|944
*
8AGW|1|f|G|1375
8AGW|1|f|C|1376
*
8AGW|1|f|G|1431
8AGW|1|f|C|1432
8AGW|1|f|A|1433
8AGW|1|f|G|1434
8AGW|1|f|A|1435
8AGW|1|f|U|1436
8AGW|1|f|C|1437
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L15-A
- Chain N
- 60S ribosomal protein L28
- Chain R
- 60S ribosomal protein L32
- Chain i
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain l
- 60S ribosomal protein L4-A
- Chain t
- 60S ribosomal protein L13-A
Coloring options: