J5_8AGX_003
3D structure
- PDB id
- 8AGX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 8AGX|1|f|U|719, 8AGX|1|f|A|784, 8AGX|1|f|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8AGX_003 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0558
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8AGX|1|f|C|675
8AGX|1|f|G|676
8AGX|1|f|A|677
8AGX|1|f|G|678
*
8AGX|1|f|C|702
8AGX|1|f|G|703
8AGX|1|f|U|704
8AGX|1|f|A|705
8AGX|1|f|A|706
*
8AGX|1|f|U|713
8AGX|1|f|G|714
8AGX|1|f|A|715
8AGX|1|f|A|716
8AGX|1|f|C|717
8AGX|1|f|G|718
8AGX|1|f|U|719
8AGX|1|f|A|720
8AGX|1|f|G|721
*
8AGX|1|f|C|749
8AGX|1|f|G|750
8AGX|1|f|A|751
*
8AGX|1|f|U|782
8AGX|1|f|A|783
8AGX|1|f|A|784
8AGX|1|f|G|785
8AGX|1|f|A|786
8AGX|1|f|G|787
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L18-A
- Chain N
- 60S ribosomal protein L28
- Chain O
- 60S ribosomal protein L29
- Chain V
- 60S ribosomal protein L36-A
- Chain l
- 60S ribosomal protein L4-A
- Chain t
- 60S ribosomal protein L13-A
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