J5_8AGZ_004
3D structure
- PDB id
- 8AGZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8AGZ|1|f|G|2116, 8AGZ|1|f|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8AGZ_004 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.0606
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
8AGZ|1|f|G|1906
8AGZ|1|f|C|1907
8AGZ|1|f|A|1908
8AGZ|1|f|A|1909
8AGZ|1|f|A|1910
8AGZ|1|f|A|1911
8AGZ|1|f|U|1912
8AGZ|1|f|A|1913
8AGZ|1|f|G|1914
*
8AGZ|1|f|U|1938
8AGZ|1|f|G|1939
*
8AGZ|1|f|U|2109
8AGZ|1|f|G|2110
*
8AGZ|1|f|C|2114
8AGZ|1|f|G|2115
8AGZ|1|f|G|2116
8AGZ|1|f|A|2117
8AGZ|1|f|C|2118
8AGZ|1|f|A|2119
8AGZ|1|f|A|2120
8AGZ|1|f|G|2121
8AGZ|1|f|G|2122
*
8AGZ|1|f|C|2331
8AGZ|1|f|A|2332
8AGZ|1|f|C|2333
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L19-A
- Chain I
- 60S ribosomal protein L23-A
- Chain J
- 60S ribosomal protein L24-A
- Chain k
- 60S ribosomal protein L3
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