J5_8AM9_007
3D structure
- PDB id
- 8AM9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 8AM9|1|a|U|1758, 8AM9|1|a|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8AM9_007 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.0479
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8AM9|1|a|G|1674
8AM9|1|a|C|1675
8AM9|1|a|A|1676
8AM9|1|a|A|1677
8AM9|1|a|A|1678
8AM9|1|a|A|1679
8AM9|1|a|U|1680
8AM9|1|a|G|1681
8AM9|1|a|G|1682
*
8AM9|1|a|C|1706
8AM9|1|a|G|1707
*
8AM9|1|a|U|1751
8AM9|1|a|C|1752
*
8AM9|1|a|G|1756
8AM9|1|a|A|1757
8AM9|1|a|U|1758
8AM9|1|a|A|1759
8AM9|1|a|C|1760
8AM9|1|a|C|1761
8AM9|1|a|A|1762
8AM9|1|a|G|1763
8AM9|1|a|C|1764
*
8AM9|1|a|G|1988
8AM9|1|a|G|1989
8AM9|1|a|C|1990
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain B
- Small subunit ribosomal RNA; SSU rRNA
- Chain d
- 50S ribosomal protein L3
- Chain j
- 50S ribosomal protein L14
- Chain o
- 50S ribosomal protein L19
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