J5_8ANY_004

3D structure

PDB id

8ANY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

UUUA*UUCG*CU*AG*CGGAACAA

Length

20 nucleotides

Bulged bases

8ANY|1|A|U|2739, 8ANY|1|A|G|2916, 8ANY|1|A|G|2917, 8ANY|1|A|A|2918

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8ANY_004 not in the Motif Atlas

Homologous match to J5_7A0S_007

Geometric discrepancy: 0.2924

The information below is about J5_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.2

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8ANY|1|A|U|2737
8ANY|1|A|U|2738
8ANY|1|A|U|2739
8ANY|1|A|A|2740
*
8ANY|1|A|U|2807
8ANY|1|A|U|2808
8ANY|1|A|C|2809
8ANY|1|A|G|2810
*
8ANY|1|A|C|2822
8ANY|1|A|U|2823
*
8ANY|1|A|A|2845
8ANY|1|A|G|2846
*
8ANY|1|A|C|2915
8ANY|1|A|G|2916
8ANY|1|A|G|2917
8ANY|1|A|A|2918
8ANY|1|A|A|2919
8ANY|1|A|C|2920
8ANY|1|A|A|2921
8ANY|1|A|A|2922

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 1

39S ribosomal protein L33, mitochondrial

Chain 3

39S ribosomal protein L35, mitochondrial

Chain Ay

Transfer RNA; tRNA

Chain D

39S ribosomal protein L2, mitochondrial

Chain M

39S ribosomal protein L15, mitochondrial

Chain W

39S ribosomal protein L27, mitochondrial

Chain X

39S ribosomal protein L28, mitochondrial