J5_8AP4_004

3D structure

PDB id

8AP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8AP4|1|a|U|1758, 8AP4|1|a|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8AP4_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0821

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8AP4|1|a|G|1674
8AP4|1|a|C|1675
8AP4|1|a|A|1676
8AP4|1|a|A|1677
8AP4|1|a|A|1678
8AP4|1|a|A|1679
8AP4|1|a|U|1680
8AP4|1|a|G|1681
8AP4|1|a|G|1682
*
8AP4|1|a|C|1706
8AP4|1|a|G|1707
*
8AP4|1|a|U|1751
8AP4|1|a|C|1752
*
8AP4|1|a|G|1756
8AP4|1|a|A|1757
8AP4|1|a|U|1758
8AP4|1|a|A|1759
8AP4|1|a|C|1760
8AP4|1|a|C|1761
8AP4|1|a|A|1762
8AP4|1|a|G|1763
8AP4|1|a|C|1764
*
8AP4|1|a|G|1988
8AP4|1|a|G|1989
8AP4|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14

Chain o

50S ribosomal protein L19